Dealing with Data 2015 – Programme

Date:                     Monday 31 August 2015, 9:30 – 16:30
Location:             Informatics Forum and Appleton Tower, University of Edinburgh

Bookings for the Dealing with Data conference are now closed.  The event is full!

Draft Programme

09:30 Refreshments
10:00 Welcome
10:05 Opening keynote: The Alchemy of Volunteered Data: turning base metal into gold, Prof Jonathan Silvertown, Institute of Evolutionary Biology.


10:45 Session 1 – Informatics Forum
10:45 – 11:05: University data, open data and the Smart Data Hack, Ewan Klein, Informatics.
11:05 – 11:25: Edinburgh Data Science and Managing National Data Services at Edinburgh. Mark Parsons, EPCC.
11:25 – 11:45: Channel shift – using data analysis to improve service delivery at the City of Edinburgh Council. Michael Wasilewski, Informatics.


11:45 Break


12:00 – 13:00 Session 2 – Informatics Forum
12:00 – 12:20: What are the challenges of collecting and analysing data in primary care? Lessons learned from a feasibility study in six general practices in Lothian, Scotland. Natalia Calanzani, Debbie Cavers, Gaby Vojt, David Weller, Christine Campbell, Population Health Sciences and Informatics.
12:20 – 12:40: Facilitating the reuse of brain imaging and clinical data from completed studies across the life course: the Brain Images of Normal Subjects (BRAINS) Imagebank. Samuel Danso, Dominic E. Job, David Alexander Dickie, David Rodriguez, Andrew Robson, Cyril Pernet, Susan D. Shenkin, Joanna M. Wardlaw, Brain Sciences.
12:40 – 13:00: Scottish Neighbourhood Statistics and R: Adding value to a public data resource with the ‘tidy data’ paradigm. Jon Minton, AQMeN.


12:00 – 13:00 Session 3 – Appleton Tower
12:00 – 12:20: Data ecosystems and wicked problems; supporting “students as researchers” in complex data environments. Arno Verhoeven, ECA; James Stewart, SPS; Ewan Klein, Informatics.
12:20 – 12:40: Networked learning analytics: Studying the association between learner generated discourse and learning. Srećko Joksimović, Dragan Gašević, Education
12:40 – 13:00: Automated Content Analysis of Discussion Transcripts. Vitomir Kovanovic, Dragan Gašević, Informatics and Education.


13:00 Lunch


13:45 – 14:45 Session 4 – Informatics Forum
13:45 – 14:05: Exploring Digital Divides in China, Ashley Lloyd, Business School; Mario A. Antonioletti, Terence M. Sloan, EPCC.
14:05 – 14:25: Gone Fishing: The Creation of the Comparative Agendas Project Master Codebook, Shaun Bevan, SSPS.
14:25 – 14:45: Electronic lab notebooks and research data management at Edinburgh Experience to date and challenges and opportunities going forward. Rory Macneil, RSpace.


13:45 – 14:45Session 5 – Appleton Tower
13:45 – 14:05: Tweeting Jonson’s “Foot Voyage”: deeply mapped data, Anna Groundwater, HCA.
14:05 – 14:25: University of Edinburgh Reid Concerts Database Project, Fiona Donaldson, Music.
14:25 – 14:45: Encountering feminism on Twitter, Prof Viviene Cree, and Dr Steve Kirkwood, Social and Political Science, with Dr Daniel Winterstein, Sodash.


14:45 Break


15:00 – 16:00 Session 6 – Informatics Forum
15:00 – 15:20: The VELaSSCo framework: a software platform for end user analytics and visualization of large simulation datasets, G. Filippone, A. Janda, K.J. Hanley, S. Papanicolopulos and J.Y. Ooi, IIE, Engineering.
15:20 – 15:40: From raw data to new fundamental particles: The data management lifecycle at the Large Hadron Collider, Andrew Washbrook, Physics.
15:40 – 16:00: Tipping the balance – introducing data management on a centre-wide level, Tomasz Zieliński, Eilidh Troup, Andrew Millar, Biology.


16:00 Closing talk: Kevin Ashley, Director, Digital Curation Centre
16:30 End

Highlights from the RDM Programme Progress Report: May 2015

Work was completed on collating and assembling 17 self-assessment statements for Edinburgh DataShare’s Data Seal of Approval application for trusted digital repository status.

‘Recommended File Formats’ and ‘Trustworthiness’ pages have been added to Edinburgh DataShare documentation as evidence to support Edinburgh DataShare’s Data Seal of Approval application.

The DataSync service build, testing and documentation is now complete, and the service went live on 27th May 2015.

The RDM website continues to add new content. Links are being checked and corrected to match the format needed for the migration to Drupal.

A Call for Papers for the ‘Dealing with Data 2015’ conference has been was finalised, and an announcement was posted on the data blog and call for papers were sent out to Research Administrators, Directors of Research and Research staff in three colleges.

System design of the DataVault project funded by Jisc has commenced, with the architecture being developed jointly between the universities of Edinburgh and Manchester. Development is due to start in June. A ‘ skeleton service’ is currently being scoped, to offered as an interim service.

A one-page EPSRC compliance guide has been produced to assist PIs with meeting the EPSRC research data expectations.

The Data Library is currently looking at end user interface improvements to the new Mirage theme for DataShare.

Talks are continuing between the Data Library, Learning, Teaching & Web Division, and North Carolina about a MANTRA MOOC for academic year 2015-16.

Stuart Macdonald
RDM Service Coordinator / Associate Data Librarian

Analytics platform trial

Information Services is evaluating a new collaborative platform for data-science and analytics as part of its expanding portfolio of services for researchers. We are looking for researchers with suitable problems who expect to achieve results in the one-year trial. We will be able to work closely with a small number of projects to help them get the most out of the platform, and training will be available. In addition, we encourage further researchers to use the platform with less formal support.

The Aridhia AnalytiXagility Platform

AnalytiXagility is a purpose-built, user-friendly, collaborative platform for data science and analytics. It allows your team to easily create, discuss, modify and share analyses in a single, secure system accessed conveniently through a web browser.
The platform handles routine data management tasks such as confidentiality, availability, integrity and audit, reducing time to insight and discovery. In particular, it is ideally suited for:

  • Exploring, comparing and linking structured datasets including data quality profiling
  • Supporting data management, accountability and provenance
  • Processing large datasets that do not fit in memory

Bring your team

Project members collaborate through a private workspace configured with compute, storage and analytical tools. Embedded social media tools allow teams to post and share questions, updates, comments and insights, building an active record of the research undertaken.

Bring your data

Users import their datasets using the secure and reliable file transfer mechanism, SFTP. Working files (documents, images, analysis scripts) can be uploaded directly through the web interface, and tagged for easy management and retrieval by the team.

Bring your analysis

AnalytiXagility provides an analysis platform, based on R, which can be accessed through a web browser. Combining R with an SQL database and an associated access library allows researchers to analyse their data in a faster and more scalable way than with R alone.

Generate your output

The platform supports generation of PDF reports for communication and publication using LaTeX templates, such as those provided by many leading journals, in which users can embed active analytical scripts to auto-generate images and tabular data within the report at runtime.

More information

If you are interested in participating in the trial, please email IS.Helpline@ed.ac.uk with the subject “XAP Trial”.

Further information can be found at:

Steve Thorn
Research Services
IT Infrastructure

Fostering open science in social science

FOSTER_logoOn 10th of June, the Data Library team ran two workshops in association with the EU Horizon 2020 project, FOSTER (Facilitate Open Science Training for European Research), and the Scottish Graduate School of Social Science.

The aim of the morning workshop, “Good practice in data management & data sharing with social research,” was to provide new entrants into the Scottish Graduate School of Social Science with a grounding in research data management using our online interactive training resource MANTRA, which covers good practice in data management and issues associated with data sharing.

The morning started with a brief presentation by Robin Rice on ‘open science’ and its meaning for the social sciences. Pauline Ward then demonstrated the importance of data management plans to ensure work is safeguarded and that data sharing is made possible. I introduced MANTRA briefly, and then Laine Ruus assigned different MANTRA units to participants and asked them to briefly go through the units and extract one or two key messages and report back to the rest of the group. After the coffee break we had another presentation on ethics, informed consent and the barriers for sharing, and we finished the morning session with a ‘Do’s and Dont’s exercise where we asked participants to write in post-it notes the things they remembered, the things they were taking with them from the workshop: green for things they should DO, and pink for those they should NOT. Here are some of the points the learners posted:

DO
– consider your usernames & passwords
– read the Data Protection Act
– check funder/institution regulations/policies
– obtain informed consent
– design a clear consent form
– give participants info about the research
– inform participants of how we will manage data
– confidentiality
– label your data with enough info to retrieve it in future
– develop a data management plan
– follow the certain policies when you re-use dataset[s] created by others
– have a clear data storage plan
– think about how & how long you will store your data
– store data in at least 3 places, in at least 2 separate locations
– backup!
– consider how/where you back up your data
– delete or archive old versions
– data preservation
– keep your data safe and secure with the help of facilities of fund bodies or university
– think about sharing
– consider sharing at all stages. Think about who will use my data next
– share data (responsibly)

DON’T
– unclear informed consent
– a sense of forcing participants to be part of research
– do not store sensitive information unless necessary
– don’t staple consent forms to de-identified data records/store them together
– take information security for granted
– assume all software will be able to handle your data
– don’t assume you will remember stuff. Document your data
– assume people understand
– disclose participants’ identity
– leave computer on
– share confidential data
– leave your laptop on the bus!
– leave your laptop on the train!
– leave your files on a train!
– don’t forget it is not just my data, it is public data
– forget to future proof

Robin Rice presenting at FOSTERing Open Science workshop

Our message was that open science will thrive when researchers:

  • organise and version their data files effectively,
  • provide comprehensive and sufficient documentation for others to understand and replicate results and thus cite the source properly
  • know how to store and transport your data safely and securely (ensuring backup and encryption)
  • understand legal and ethical requirements for managing data about human subjects
  • Recognise the importance of good research data management practice in your own context

The afternoon workshop on “Overcoming obstacles to sharing data about human subjects” built on one of the main themes introduced in the morning, with a large overlap of attendees. The ethical and regulatory issues in this area can appear daunting. However, data created from research with human subjects are valuable, and therefore are worth sharing for all the same reasons as other research data (impact, transparency, validation etc). So it was heartening to find ourselves working with a group of mostly new PhD students, keen to find ways to anonymise, aggregate, or otherwise transform their data appropriately to allow sharing.

Robin Rice introduced the Data Protection Act, as it relates to research with human subjects, and ethical considerations. Naturally, we directed our participants to MANTRA, which has detailed information on the ethical and practical issues, with specific modules on “Data protection, rights & access” and “Sharing, preservation & licensing”. Of course not all data are suitable for sharing, and there are risks to be considered.

In many cases, data can be anonymised effectively, to allow the data to be shared. Richard Welpton from the UK Data Archive shared practical information on anonymisation approaches and tools for ‘statistical disclosure control’, recommending sdcMicroGUI (a graphical interface for carrying out anonymisation techniques, which is an R package, but should require no knowledge of the R language).

DrNiamhMooreFinally Dr Niamh Moore from University of Edinburgh shared her experiences of sharing qualitative data. She spoke about the need to respect the wishes of subjects, her research gathering oral history, and the enthusiasm of many of her human subjects to be named in her research outputs, in a sense to own their own story, their own words.

Links:

Rocio von Jungenfeld & Pauline Ward
EDINA and Data Library