Tag Archives: open science

Protocols.io trial… six months on!

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We launched a trial of protocols.io Enterprise in December 2019, and a lot has been achieved in the first six months.

The number of registered UoE users has increased from 121 to 217 and the number of private protocols from 36 to 106 which demonstrates a significant interest in using the platform with its additional Enterprise functionality,

We have also run a number of webinars specifically for UoE staff and students which have been well attended.

While these numbers suggest interest amongst our research community in using protocols.io we have to collect better feedback before we can decide if protocols.io Enterprise is to become an ongoing service provided by the University.

That is why we are now launching this short survey about protocols.io which is open to all UoE research staff and students. The aim is to gather initial thoughts from our community and to identify people who may be prepared to contribute more in-depth feedback as the trial progresses.

The survey can be accessed at https://edinburgh.onlinesurveys.ac.uk/protocols-io-6-month-survey

To find out more about protocols.io or this trial you can read this blogpost from when the trial launched: https://libraryblogs.is.ed.ac.uk/2019/12/13/new-research-data-management-tool-on-one-year-trial-protocols-io/

Alternatively please visit our website, where you will also find links to all the protocols.io webinars we have run: https://www.ed.ac.uk/information-services/research-support/research-data-service/during/open-research-tools/protocols

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Kerry Miller
Research Data Support Officer
Library & University Collections

Two new Quick Guides for good Research Data Management

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The Research Data Support team have recently published two new Quick Guides, the latest in a series of short, user-friendly documents intended to help our research staff and students plan, manage and preserve their data effectively, safely, and for the long-term.

Quick Guide 5 takes the topic of “Open Research” – also known as Open Science, particularly in a European context. The drive towards research transparency and the removal of barriers to accessibility has gathered a great deal of momentum over recent years, to the extent that “Open by default” is an increasingly common approach. Open research enables scientific findings to be tested, reproduced and built upon far more quickly than traditional approaches allowed. The benefits of Open Research are being demonstrated in real time, right in front of our noses, as researchers at Edinburgh tackle various aspects of the Covid-19 pandemic. We recently tweeted about one such project which examined the effectiveness of face coverings in reducing the range travelled by breath, which of course helps transmit the virus. The data underpinning this research is freely available to everyone via Edinburgh DataShare.

The latest Quick Guide, the sixth in the series, addresses the ‘FAIR’ principles, which state that research data should – so far as possible, and appropriate – be Findable, Accessible, Interoperable and Reusable. These principles emphasise machine-actionability (i.e. the ability of automated computational systems to find, access, interoperate, and reuse data with minimal or no human intervention) as humans increasingly rely on computational means to discover and work with data as a result of the increase in volume, complexity, and creation speed of data.

These two new publications join our existing guidance on topics such as the basics of Research Data Management (RDM), RDM and data protection, and research data storage options at the University. Future topics planned include conducting research safely online, FAIR approaches to research software, and an overview of the systems and services available at Edinburgh in support of Open Research. If there is a particular topic you would find useful, please get in touch with us via data-support@ed.ac.uk or the IS Helpline.

All of our Quick Guides can be found at https://www.ed.ac.uk/information-services/research-support/research-data-service/guidance

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Martin Donnelly
Research Data Support Manager
Library and University Collections

Research data management in a time of quarantine

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Covid-19 has shaken up our world, and disrupted University life as we know it. But in terms of a silver lining, it has provided opportunities for open data / open research to prove their worth, in the search for a vaccine and other approaches to managing and treating the complications of the virus. SPARC Europe have collected a number of case studies on Open Science and the Coronavirus. If you’ve been working on Coronavirus research here at Edinburgh, we’d love to hear from you, especially if there is anything we might be able to do to help. So far we have engaged with researchers in all three Colleges studying, or hoping to study, an aspect of COVID-19; about handling sensitive data, archiving or sharing relevant data, or bidding for new research.

How has it affected us in Research Data Support?

  • We are all working from home, although some of us have unavoidable childcare responsibilities which may slow down responses;
  • In terms of answering Research Data Management (RDM) enquiries it’s business as usual. UniDesk has been a little quieter than usual, but we are receiving more complex queries as researchers adjust to the new reality;
  • Data Management Plan (DMP) assistance is business as usual, and we are now set up on Teams for video consultations – let us know if you’d be interested in one of these;
  • During the lockdown we will be refreshing our existing Research Data MANTRA training and directing research staff and students to this resource in place of our face-to-face training, which has been temporarily suspended. If you have a question or would like to discuss any aspect of RDM or Data Management Planning please contact the team using data-support@ed.ac.uk to setup an online consultation.

From the researcher’s point of view, in some cases collecting and processing or analysing new data may be more difficult than it usually is, and in many cases impossible without access to lab equipment or direct contact with research subjects. So why not turn your attention to other elements of RDM, such as preparing older data for deposit, and linking it with your published research papers to fortify the scholarly record?

What can you do?

  • Use the time away from the lab or the field to tidy up data you’ve already collected or created (and don’t forget to attach metadata/contextual information!);
  • Deposit completed data in DataShare (or a disciplinary repository, with metadata recorded in Pure);
  • If you have deposited in DataShare before, check the usage stats and AltMetrics feed to see whether it has been used by others;
  • Create an ORCID (unique, persistent global researcher’s ID), and link it with your Pure account to ensure you stay linked with your outputs throughout your career;
  • Invite us to comment on your DMP, or get in touch about anything else RDM-related;
  • Let us know if you’d like to arrange any bespoke training or awareness-raising sessions;
  • Take some or all of the MANTRA course and let us know if you have any comments.

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Martin Donnelly
Research Data Support Manager
Library and University Collections

New research data management tool on one-year trial: protocols.io

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Information Services aims to offer a research data service that meets most of the data lifecycle needs of the majority of UoE researchers without interfering with their freedom to choose tools and technologies which suit their work. In some cases cloud tools that are free to individual users are offered commercially as enterprise versions, allowing groups of researchers (such as lab groups) to work together efficiently.

The service’s steering group has agreed a set of criteria to apply when a tool is put forward by a research group for adoption. The criteria were developed after our two-year trial of the electronic lab notebook software, RSpace, and have been most recently applied to protocols.io. The protocols.io trial begins this month and will run for one year. An evaluation will determine whether to continue the enterprise subscription and how to fund it.

protocols.io is an online platform for the creation, management, and sharing of research protocols or methods. Users can create new protocols within the system, or upload existing methods and digitise them. Those with access to a protocol can then update, annotate, or fork it so that it can be continually improved and developed. There is interoperability with Github and RSpace, and long-term preservation of protocols through CLOCKSS.

Users can publish their protocol(s) making them freely available for others to use and cite or, with the enterprise version, keep them private. The tool supports the Open Science / Open Research agenda by helping to ensure that methods used to produce data and publications are made available, assisting with reproducibility.

Subscribing to the University plan will allow research groups to organize their methods and ensures that knowledge is not lost as trainees graduate and postdoctoral students move on. There are currently over 70 University of Edinburgh researchers registered to use protocols.io. You may follow these instructions to move your current protocols.io account to the premium university version. For more information contact data-support@ed.ac.uk.

Kerry Miller and Robin Rice
Research Data Support team