Do it like they do on the DiscoverEd channel

DiscoverEd is the Library's discovery service and principal search tool

DiscoverED, the University of Edinburgh’s new one step information, discovery and delivery service, is now on-line and fully operational. You can request Library Annexe items using the new service; all you have to do is sign in and find the items using the search bar. As well as books, DiscoverEd will search ebooks, ejournal articles and more.

The first request for a Library Annexe item was placed by non-other than our staff member Dominic Tate. Congrats Dominic, we know how important this is to you. [You will receive your diploma in the mail shortly.]

You can read all about DiscoverED at the links below.

About DiscoverEd

Search for Library Annexe items and more

Marko Mlakar, Library Annexe Assistant

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LUNA 7 goes live!

images.isOur imaging platform (http://images.is.ed.ac.uk) has been given a keenly-awaited revamp with the upgrade to the LUNA 7 software. Those of you that are familiar with the old version may not notice much difference, as most of the changes are to the back-end of the product; for the photographers, though, it is a godsend, as the new system allows them to streamline their workflow in such a way that they can work with fewer applications, and do their own uploads to the front end with a frequency not previously possible. It should also give the front-desk staff in the CRC a way to search across all images- public and private- which is purely web-based, and thus allows multiple users to work concurrently.
map

The front-end has had some work done to it- largely regarding our organisation of the collections. We’ve decided that the main LUNA site should only feature images we own, for access requests as well as more meaningful search results. This means that our teaching collections, and the Charting The Nation and Ars Anatomica project outputs have moved to a separate site (http://images-teaching.is.ed.ac.uk/luna/servlet), but we’ve kept our own material for these in the Maps and Anatomy collections, which will hopefully grow. We have also introduced 1760 images related to the recognised Carmichael Watson collection, and have developed “Museums”, where we’ll host Museums-related content which doesn’t belong in one of the larger museums sets (eg Fine Art, MIMEd).
carwat

Please have a play with it, and if you have any feedback, don’t hesitate to let us know, at lddt@mlist.is.ed.ac.uk

Thanks to Susan, Claire, Norman, and everyone who’s given us any testing or infrastructure-related help, for their efforts on this!

Scott Renton- Digital Development

Posted in Archives, Carmichael Watson Project, Collections, CRC, Development, Featured, Library & University Collections, Rare Books | Comments Off on LUNA 7 goes live!

Analytics platform trial

Information Services is evaluating a new collaborative platform for data-science and analytics as part of its expanding portfolio of services for researchers. We are looking for researchers with suitable problems who expect to achieve results in the one-year trial. We will be able to work closely with a small number of projects to help them get the most out of the platform, and training will be available. In addition, we encourage further researchers to use the platform with less formal support.

The Aridhia AnalytiXagility Platform

AnalytiXagility is a purpose-built, user-friendly, collaborative platform for data science and analytics. It allows your team to easily create, discuss, modify and share analyses in a single, secure system accessed conveniently through a web browser.
The platform handles routine data management tasks such as confidentiality, availability, integrity and audit, reducing time to insight and discovery. In particular, it is ideally suited for:

  • Exploring, comparing and linking structured datasets including data quality profiling
  • Supporting data management, accountability and provenance
  • Processing large datasets that do not fit in memory

Bring your team

Project members collaborate through a private workspace configured with compute, storage and analytical tools. Embedded social media tools allow teams to post and share questions, updates, comments and insights, building an active record of the research undertaken.

Bring your data

Users import their datasets using the secure and reliable file transfer mechanism, SFTP. Working files (documents, images, analysis scripts) can be uploaded directly through the web interface, and tagged for easy management and retrieval by the team.

Bring your analysis

AnalytiXagility provides an analysis platform, based on R, which can be accessed through a web browser. Combining R with an SQL database and an associated access library allows researchers to analyse their data in a faster and more scalable way than with R alone.

Generate your output

The platform supports generation of PDF reports for communication and publication using LaTeX templates, such as those provided by many leading journals, in which users can embed active analytical scripts to auto-generate images and tabular data within the report at runtime.

More information

If you are interested in participating in the trial, please email IS.Helpline@ed.ac.uk with the subject “XAP Trial”.

Further information can be found at:

Steve Thorn
Research Services
IT Infrastructure

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A Life Cut Short: Stephanie’s Story

Stephanie (courtesy of Lauren McGregor)

In 1936, Julia Stephanie Evadne McGregor was in the final year of a five-year medical degree and showed all the signs of a highly motivated and conscientious student who would do well.  In January 1936, she was admitted to the Royal Infirmary of Edinburgh, again in May and then June.  She died on 4th July of rheumatic fever.  On the anniversary of her death this year, the University is awarding a posthumous degree, with her family in attendance.

Stephanie (as she was known) was born in Gayle St. Mary, Jamaica on 9th April 1911, the daughter of Peter James McGregor and his wife Julianna Drucilla Marsh. She attended Wolmer’s Girls High School in Kingston, Jamaica from 1923-1929 and matriculated at the University of Edinburgh to study medicine in April 1931, having obtained her matriculation certificate at the University of London the previous August. On 21 October 1931 she registered as a student member of the General Medical Council.

Her first year of study saw her study under (amongst others) Professors James Hartley Asworth (Zoology), George Barger (Chemistry) and William Wright Smith (Botany), passing her first professional exams in 1932. In her second year her Professors were Edward Sharpey-Schafer (Physiology) and James Couper Brash (Anatomy). She passed her second professional exams  in 1933.

Holiday at Kirn, Argyll, 1932

On holiday at Kirn, Argyll, 1932 (courtesy of Lauren McGregor)julia2back

In October 1933, Marjorie Rackstraw in her capacity as Adviser of Women Students, wrote to Professor Sir Sidney Smith, Dean of the Faculty of Medicine, informing him that Stephanie was in financial difficulties, having received no allowance since the previous August, due to her family being in financial difficulties themselves. As a result, she was able to gain an award of £25 from the Medical Bursaries Fund. By the following February, this plus money Stephanie had managed to raise elsewhere was once again exhausted and Miss Rackstraw wrote again to Prof. Smith to explore other options, specifically a loan

She described Stephanie as capable and sensible, “one of the best of her class and has gained merit certificates in four of her subjects and one prize in Botany”. The letter also recorded that Stephanie was planning to apply for a Vans Dunlop Scholarship and, “if the  banana harvest is satisfactory she should be able to meet her expenditure during the next two years”. A further grant of £50 from the Medical Bursaries Fund was awarded.

Further troubles arose in late 1934. On 29th October Miss Rackstraw wrote again to Prof. Smith, explaining that Stephanie’s father had died a few weeks earlier, presenting more financial problems over and above dealing with the bereavement.  She was to receive further small pots of money.

By 1935, Stephanie was living in Masson Hall of Residence, where Marjorie Rackstraw was warden.  The building no longer exists, having been demolished in the 1960s to make way for the Main Library building.  However there are extensive records, including photographs, and one that includes Stephanie survives.

Group photograph of residents and others at Masson Hall of Residence, 1935

Group photograph of residents and others at Masson Hall of Residence, 1935

1936 did not start well for Stephanie.  She fell ill on the 17th January and ended up in the Royal Infirmary but was let out after 15 days on the condition that she go away for convalescence.  She went to say with a Mrs Corrigall at “Stromness, Kirn, Argyll”, but the ordeal journey there resulted in a week in bed and further time away from study.  She wrote to Prof. Smith to explain her situation.

Mrs. Corrigall, with whom I am staying, called in her family Doctor and I have been under his care ….. I am still quite unfit to face classes and work ….. I am very troubled about my attendance and classes ….. This is the first time in the five years of my academic life, Sir, that I have for any reson or other been forced to miss my classes

Steph's signature

Signature, from letter in her student file

On 5 July 1936, Marjorie Rackstraw again wrote to Prof Smith but this time she was not looking for financial assistance.  Instead she had the task of informing him that Stephanie had died the day before, a victim of “rheumatic fever following tonsillitis which affected her heart”. Her funeral was held at St. John’s Episcopal, where she had been a member of the congregation, and she was buried at Piershill Cemetery.

Funeral notice (copy from her student file)

Funeral notice (copy from her student file)

Since the later 19th century, women students had been battling to gain parity with their male counterparts.  It was not until the 1890s that women were able to matriculate as students and it was only in 1915 that they gained an equal status to men within the Faculty of Medicine.  Even by the time Stephanie was studying, numbers of female students were very small compared to men, having only just edged over 10%.  Had Stephanie graduated, she would have made up one of only 19 women who were awarded a degree of MBChB that year.  Although she probably never saw herself as such, Stephanie can be seen as a contributor towards a major change within medical education, paving the way for those who followed.

At the graduation ceremony which takes place on 4th July 2015, coincidentally on the 79th anniversary of Stephanie’s death, the University of Edinburgh is awarding her a posthumous degree.

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Bohemian Protest on Display

0013625c

To commemorate the 600th anniversary of the death of Church reformer Jan Hus (d.1415), the Centre for Research Collections is currently displaying the Bohemian Protest, a document surrounded by the seals of 100 members of the Czech nobility in protest at Hus’ treatment at the hands of the Council of Constance.

Hus had travelled to Council to lobby for religious reform, protected by a safe-conduct pass from the Emperor – but on his arrival he was seized and executed as a heretic on 6th July 1415. This document is dated 2nd September 1415 and contains the names and seals of 100 member of the Bohemian nobility – it has come to represent the cause for religious freedom.The Bohemian Protest after conservation.

It was acquired by theologian William Guild (1586-1657) while he was on the continent during the British civil wars, and subsequently bequeathed to the University of Edinburgh. The manuscript was written on vellum and the weight of the 100 wax seals makes it very fragile. This is the first time it has been displayed since receiving modern conservation treatment and rehousing.

0013629c

The document can be viewed in high resolution on the University of Edinburgh Image Collections.

The Bohemian Protest is one of the University of Edinburgh Iconic items – you can learn more about this collection of objects on the Iconic webpages.

 

Fran Baseby, CRC Service Delivery Curator

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ReCon 2015: Research in the 21st Century: Data, Analytics & Impact

recon-logo2

Last week a few us attended ReCon 2015 here in Edinburgh which proved to be very interesting.

Session 1: Beyond the paper: publishing data, software and more
Attended by Scott Renton

Scott Edmunds from Gigascience works on a platform which attempts to keep the publication of research data up to speed with its mind-boggling rate of production. Now that we’re moving “beyond dead trees” into the digital realm, many problems are having to be tackled, such as meaningful peer review (which won’t result in retractions), skewed incentive systems (reward republication, not advertising; reward executable data) etc. He praised such tools as knitr, which effectively generate papers from data, and pointed out the importance of getting the research out there (citing ebola and climate change as examples where problems could be mitigated in this way).

Arfon Smith from GitHub linked the whole Research Data publication problem to his own speciality: the Git version control system. He is aware that Open is the new norm, that PDFs are unsatisfactory, and that we don’t share in a useful, creditable way. Communities form around a shared challenge/shared data, and this open source model can be utilised by academia, in a similar way to software development.

Stephanie Dawson from scienceopen spoke  about aggregators, stating that these are the drivers of impact. She is very skeptical about any kind of journal level impact rankings (“negotiated, irreproducible, and unsound”), but is far more optimistic about article level tools where usage stats, citations etc. are meaningful.

Peter Burnhill from Edina talked about “link rot” and “content drift”, and suggested that more thought in general needs to be given to the persistence of URLs and content in order that the data remains available. He offered up- with some interesting case studies- some quite depressing statistics about how much of the PMC and Elsevier corpora are “rotten”, but he did suggest that the rates are steadily improving, so there is some good news out there!

Session 2: Digital communities and social networks for researchers by Steve Wheeler (@timbuckteeth)
Attended by Stephanie (Charlie) Farley (@Sfarley_Charlie)

Steve had a lot to say about the importance of open access to education in the digital age. We have the technology but do we have the will to be open? When you publish research you’re educating your community, hoarding knowledge from those who desperately need it is almost perverse. Additionally, there is a payback to making your work open and available. Steve recommended using Google Scholar to compare your own closed vs. open journal Google citations list and see for yourself.

He spoke of how open access works to serve the community of users. Communities are no longer related to or defined by locations, today’s definition of community is about a common interest. Communities celebrate, connect, communicate (online en masse), and in this way everything can be collaborative if we want it to be. Steve encouraged attendees to look up Dave Cormier’s research on the rhizomatic model of learning. Rhizomatic curriculum is not driven by predefined inputs from experts; it is constructed and negotiated in real time by the contributions of those engaged in the learning process. More of Cormier’s research on this can be found on his blog davecormier.com/edblog.

Some teachers don’t trust what the students are doing, they don’t like students sitting behind laptops with hidden windows and screens, but he again encouraged educators to take up this technology in an open and useful way. Create unique hashtags for your course/lectures and have a Twitter back channel during each lecture session. In one of his lectures students were using the Twitter back channel to discuss a book that was part of that week’s readings, he ReTweeted their question, tagging the author, and the author joined the conversation!

In addition to being useful in the classroom, Twitter can be an incredibly useful tool for academics and the power of networking can greatly improve your likelihood of being cited. Note: I went and did a quick bit of research on this myself and found some interesting research showing that actually yes, ‘highly tweeted articles were 11 times more likely to be highly cited than less-tweeted articles’.(Eyesenbach, ‘Can tweets predict citations?’, J Med Internet Res 2011, 13(4), DOI: 10.2196/jmir.2012)

The session was incredibly interesting and also provided my new word for the week: Darwikianism

Session 3: Altmetrics, analytics and tracking engagement
Attended by Dominic Tate & Ianthe Sutherland

The first presentation after lunch from was Euan Adie who is the CEO of Altmetric. He spoke about the lessons that have been learned by trying to measure impact – overall lesson is that you can’t measure impact! He spoke about how it’s hard to engage academics with impact as many feel that the quality of their research should speak for itself. Citation counts just give academic interest rather than the impact an article has made – impact should be academic attention as well as broader attention. Social media attention and blog comments doesn’t really speak for the quality of the research but can show how much research is being talked about online. Academics don’t seem to be credited for policy decisions and documents and this could be a direct impact of their research. Euan also spoke about Altmetrics, a manifesto (altmetrics.org/manifesto) and a conference 2:AM (www.altmetricsconference.com) coming up in October.

Then Anna Clements – Assistant Director (Digital Research), St Andrews University Library – gave an excellent presentation highlighting the role of a University Library in supporting the research undertaken at an institution.  Anna made a series of good points about the importance of partnering with researchers during the research process rather than simply dealing with the outputs retrospectively.  Anna also highlighted the changing role of the library as seeks to support new areas such as research data management and the research impact agenda.

The final presentation was from Kaveh Bazargan, Director, River Valley Technologies. He spoke about how research is submitted in PDF form and all the metadata about the research, such as the title, author, email, abstract keywords (in XML format) is then reverse engineered from the PDF when this information should just be provided with the PDF in the first place. He gave a good analogy that the PDF is represented by a smoothie and we need to know what the fruit is (the XML). He then gave a live demo of River Valley’s product for writing which automatically produces the PDF in TeX format and the associated metadata XML without any reverse engineering required, as the XML is produced at the source. It is easy to make updates and re-produce the PDF and XML as needed.

Posted in Altmetrics, Conference, Digital Communities, Publication, Social Networks | Comments Off on ReCon 2015: Research in the 21st Century: Data, Analytics & Impact

New Dawsonera online reader launched

logoDawsonera have now launched their new online reader.  This includes a number of enhancements to improve the user experience of reading e-books on their platform.

The main enhancement we have all been waiting for – page range printing, is now available.

The new reader includes the following enhancements:

– An expanded view of the e-book to give full screen reading as well as a zoom in/out feature.  Accessibility has been audited by the RNIB (Royal National Institute for the Blind).

– Printing Improvements – you can now print page ranges rather than one page at a time.  You have a print preview of the pages selected before you send them to the printer and a print allowance is shown for each book consisting of what you have already printed, and how many more pages you are allowed to print.*

– Copying Improvements – the copy button now shows allowance per book – copies used and remaining, there is a preview page before copying to your clipboard.*

– Searching within an e-book and hit highlighting.

– Improved page navigation using the table of contents, improvements to scrolling and intuitive icons.

– Private and shared notes.  See the user guide below for full details on how this works.

– Improvements to the reader layout on a mobile device so that it has the same features as the desktop version…the PowerPoint link below shows screenshots of the new Dawsonera reader on a PC, mobile and tablet.

Some library staff met with Dawsonera recently to see a preview of the new reader.  See the slides demonstrating the various enhancements at http://www.docs.is.ed.ac.uk/docs/Libraries/Main/E-Resources/E-Books/DawsonEraNewReader.pptx

A user guide for the new reader is now available at http://www.docs.is.ed.ac.uk/docs/Libraries/Main/E-Resources/E-Books/DawsoneraOnlineReader_UserGuide.pdf

Dawsonera have a list of FAQs here.

We welcome feedback on the new reader – please contact your academic support librarian to give your feedback.

*Can’t print or copy if offline, the reader needs online access for DRM management.

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OAI9

Last week I attended the CERN Workshop on Innovations in Scholarly Communication (OAI9) in Geneva, a workshop looking at developments in scholarly communication, it was a diverse programme and attracted people from all sectors of scholarly communication,  here are some of my highlights from each day;

Day One – Beginning the first day were a choice of tutorials,  I elected  the institution as publisher: getting started presented by UCL who are the first fully Open Access University Press in the UK. This offers a real alternative to commercial publishers, at the moment the majority of UCL Press authors are internal, external authors are liable to pay an APC.

The Keynote by Michael Nielsen, Beyond Open Access, looked at how open access policies should be crafted so they don’t inhibit innovation by constraining experimentation, new media forms and different types of publication. Following this was the session Looking at Barriers and Impact, Erin McKiernan, who is an early career researcher talked about her own experience and barriers she has faced in accessing research, she has made a pledge to be open, her opinion was early career researchers are in a position to be game changers in terms of making their research open. Finally Joseph McArthur, talked about the Open Access button  helping readers find open access versions of research outputs, this is a tool created by young people who frequently faced barriers to accessing research.

Day Two – The second day of the workshop was held at the Campus Biotech

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The first session looked at Open Science Workflows, CHORUS and SHARE, Jeroen Bosman and Bianca Kramer from Utrecht gave a really interesting presentation on the changing workflow of research – they had three goals for science and scholarship – Open, Efficient, Good. We should be supporting open science instead of just open access leading to diminishing traditional journals. This was highlighted using a diagram they created – 101 innovations in scholarly communication, highlighting the patterns and processes of innovation in this field.  This is an ongoing survey of scholarly communication tool usage – part of an ongoing effort to chart the changing landscape of scholarly communication.

Following this session was Quality Assurance, focusing on researchers and reforming the peer review process. Janne-Tuomas Seppanen from Peerage of Science  stated that some peer reviews are excellent – some are not, Peerage of Science tries to address this by the scoring of peer reviews, the idea being that peer reviewers are themselves peer reviewed increasing and quantifying the quality of peer review. This service is free for academics and publishers pay. Andrew Preston from Publons is looking at speeding up science by making peer review faster, more efficient, and more effective. The incentive for reviewers? Making peer review a measurable research output.

I also attended the break out session on Copyright in Data and Text Mining which gave an overview of the legal framework and an introduction to The Hague Declaration on Knowledge Discovery in the Digital Age launched in May this year which ‘aims to foster agreement about how to best enable access to facts, data and ideas for knowledge discovery in the Digital Age. By removing barriers to accessing and analysing the wealth of data produced by society, we can find answers to great challenges such as climate change, depleting natural resources and globalisation.’

The second day of the workshop ended in style at the Ariana,  the Swiss museum of glass and ceramics which opened its doors especially for attendees of OAI9.

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Day Three – The focus of the first session was the Institution as Publisher, a new theme for OAI. Catriona Maccallum from PLOS focused on the need for transparency, publishing is a cycle, not just about content provision. The services an institution can offer include; Open Access, Open Access Presses, transparency, assessment, rewards and incentives, she went on to say the institution should be driving changes. Rupert Gatti, Open Book Publisher talked about bringing publishing to a research centre level, open access allows direct dissemination to a different audience and would allow authors to disseminate not just books and articles but other types of scholarly output.The Final speaker in this session, Victoria Tsoukala from National Documentation Centre, National Hellenic Research Foundation talked specifically about open access publishing in the Humanities and gave an overview of University led publishing within her institution looking at the various challenges (funding, outputs being perceived as poorer quality) and the opportunities (ability to regain control, innovation, transparency and fairness and assuming new roles for libraries).

If you’re interested in finding out more, all the presentations are available online by clicking through the programme.

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County Surveys Project Launches Online Bibliographic Tool

We are pleased to report that the County Surveys of Great Britain 1793 – 1817 project, which is related to the Statistical Accounts, has now released an online bibliographic search tool. This is a key output of this pilot project and will be of wide interest to historians and researchers in many fields.

Here we re-post of the County Surveys blog announcement:

We are delighted to announce that our bibliographic search tool is now live and accessible from the ‘Search’ tab in the menu above.

Our demonstrator includes bibliographic data from some of the best collections of the surveys and, where possible, provides links to library catalogue entries and  digital editions. Researchers can search by modern county name, by series, by county and by author. Results are presented in a new tab after each search, so that you can compare multiple search results by toggling between pages. There are also detailed analyses of collections, revealing the extent of holdings and coverage, and indicating which surveys would be needed to complete each collection.

demonstrator2

 

We hope that the demonstrator will be a useful finding aid and discovery tool for those interested in the County Surveys, the history of statistical reporting and British history more broadly. We would welcome any feedback on the tool, and would be very keen to hear about how it is used or whether it could usefully offer other features and information. If you have ideas, please get in touch with us at edina@ed.ac.uk.

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Presenting the Data Vault

Blog post by University of Manchester project developer Tom Higgins:

Yesterday I gave a short presentation on the Data Vault project at an event in Lancaster:

https://www.eventbrite.co.uk/e/research-data-management-solutions-for-your-needs-tickets-17100593335

I based this on the original pitch with a few updates reflecting the work we’ve done over the last couple of months.

Here’s some of the feedback and questions from the event – I think a lot of these are more relevant for “phase 2 and beyond” than the current prototyping:

  • How does the Data Vault differ from iRODS? Perhaps the policy model from iRODS could be useful or iRODS could serve as a back-end. There was a comment that iRODS may be more useful where the researcher’s workflow is known and can be encoded into the system (e.g. it’s deeply involved in the day-to-day active data).
  • Archivematica (being explored by a project in York) can handle many preservation activities but has a specialist user interface which is not suitable for researchers to use directly. Perhaps a Data Vault could be used to ingest data and hand it over the Archivematica for preservation.
  • How would a Data Vault handle sensitive data? Would it be need to be certified? What if the “back-end” was using a certified storage system – would that ease the burden at all? I mentioned that perhaps both a “general” and a locked-down “sensitive” instance of the software could be run in parallel.
  • How could a Data Vault handle a dataset that is changing over time? Perhaps snapshots could be captured periodically – would this use a lot of storage space?
  • Could data be ingested from instruments automatically? I think this is an interesting one because the researcher will presumably want to access the data on active storage too (e.g. just ingesting into the vault isn’t particularly useful since you’d then need to pull it back out to actually work with the data, but you may want to have a frozen copy of the raw data too).
  • How could a Data Vault handle complex data e.g. from a database or an object store? In the simple case a user could export their data (e.g. in a backup format) and store that data (similar to how they might back up a database to a USB drive). Does it make sense for the a vault to try to understand complex data?

Here are some examples of “Active” and “Archive” systems which might be useful targets for integration:

  • Box
  • Hitachi Content Platform
  • DuraCloud
  • iRODS
  • Archivematica
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